The plain text answer, GameRat, is that configuration managers are just file swapping utilities. They don't care what is in the files, all they do is swap files in and out of game folders.
So, yes, it will work as long as the plugin and install files are assembled correctly; what is inside the .EXE file, or any other file, has nothing to do with the workings of any of the config managers, and they have nothing to do with what is in them. It's a GIGO thing, both on the configuration manager side and the content of those files side.
C'est magnifique, mais ce n'est pas la guerre. - Pierre Bosquet, 1854